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Publications

Title Year Cited by
Assessing Nutraceuticals for Hepatic Steatosis: A Standardized In Vitro Approach
VEJM Palasantzas, D Struik, T Bos, S Withoff, J Fu, JW Jonker, …
Nutrients 18 (3), 388, 2026
2026 0
New insights in amino sugar metabolism by the gut microbiome
W Shen, JF de Boer, F Kuipers, J Fu
Gut Microbes 17 (1), 2510462, 2025
2025 5
High-resolution analysis of the treated coeliac disease microbiome reveals strain-level variation
J Slager, HL Simpson, R Gacesa, L Chen, IL Tan, J Gelderloos, …
Gut Microbes 17 (1), 2489071, 2025
2025 1
Multi-dimensional metagenomics
H Peng, AJ Ruiz-Moreno, J Fu
Nature Reviews Bioengineering 3 (12), 1057-1072, 2025
2025 4
Longitudinal gut microbiota tracking reveals the dynamics of horizontal gene transfer
H Peng, S Andreu-Sanchez, AJ Ruiz-Moreno, A Fernández-Pato, J Wu, …
Nature Communications, 2025
2025 1
DNA methylation of genes involved in lipid metabolism drives adiponectin levels and metabolic disease
L Sinke, T Delerue, R Wilson, X Lu, Y Xia, R Costeira, MK Nasr, …
Diabetologia, 1-19, 2025
2025 1
Misfortunes never come singly: Microbial metabolites link heart failure and chronic kidney disease
J Fu, NVAM Knoers
Cell Host & Microbe 33 (10), 1652-1654, 2025
2025 0
iMeta: Boosting academic sharing and collaboration via social media
X Yao, J Wu, T Ma, CL Shi, C Lan, D Li, J Fu, Z Shen, T Chen, YX Liu
iMeta 4 (5), e70085, 2025
2025 0
Distinct microbial and metabolic shifts characterize acute coronary syndrome and recovery
J Xu, D Dai, Y Yang, S Gao, J Yang, C Dong, W Yang, J Yuan, T Wang, …
iMeta 4 (5), e70079, 2025
2025 1
Precision Psychiatry in the Gut-Brain Axis: Probiotic-Induced Modifications of the Gut Microbiome in Bipolar and Schizophrenia Spectrum Disorders
B Haarman, M Ioannou, J Wu, J Borkent, H Peng, IEC Sommer, J Fu
BIPOLAR DISORDERS 27, S40-S40, 2025
2025 0
Host and environmental determinants of human milk oligosaccharides and microbiota in the Lifelines NEXT cohort
JE Spreckels, A Kurilshikov, A Fernández-Pato, F Liu, S Brushett, C Bang, …
Cell reports 44 (8), 2025
2025 3
Microbial Adaptation in Healthy Ageing: Insights from Age-associated Structural Variation in the Human Gut Microbiome
J Fu, Y Zhang, D Zhernakova, R Gacesa, S Andreu-Sánchez, J Wu, …
2025 0
Crohn’s disease and ulcerative colitis exhibit prediagnostic antibody signatures with shared and divergent changes towards disease onset
AR Bourgonje, S Andreu-Sánchez, R Gacesa, G Innocenti, IN Kalka, …
Gut, 2025
2025 1
Advanced Dialogues: From Genomes to Microbiomes—A Cross‐Disciplinary Journey
J Fu
Advanced Genetics 6 (2), e00039, 2025
2025 0
Early-life development of the gut virome and plasmidome: A longitudinal study in cesarean-born infants
A Fernández-Pato, T Sinha, S Garmaeva, A Gulyaeva, N Kuzub, S Roux, …
Cell Reports 44 (6), 2025
2025 6
Unveiling horizontal gene transfer in the gut microbiome: bioinformatic strategies and challenges in metagenomics analysis
H Peng, J Fu
National Science Review 12 (6), nwaf128, 2025
2025 4
Longitudinal Gut Microbiota Tracking Reveals the Persistent Spread of Mobile Genes and HGT-Driven Community Stabilization
J Fu, H Peng, S Andreu-Sánchez, A Ruiz-Moreno, A Fernández-Pato, …
2025 1
Microbiota-derived bile acids antagonize the host androgen receptor and drive anti-tumor immunity
WB Jin, L Xiao, M Jeong, SJ Han, W Zhang, H Yano, H Shi, …
Cell 188 (9), 2336-2353. e38, 2025
2025 29
MicrobeRX: a tool for enzymatic-reaction-based metabolite prediction in the gut microbiome
AJ Ruiz-Moreno, Á Del Castillo-Izquierdo, I Tamargo-Rubio, J Fu
Microbiome 13 (1), 78, 2025
2025 5
Association between gut microbiome profiles and host metabolic health across the life course: a population-based study
R Li, A Kurilshikov, S Yang, JAE van Oortmerssen, A van Hilten, …
The Lancet Regional Health–Europe 50, 2025
2025 11